James M. Tiedje, Primary Publications (1999-2003):

  1. Maidak, B.L., J.R. Cole, C.T. Parker, Jr., G.M. Garrity, N. Larsen, B. Li, T.G. Lilburn, M.J. McCaughey, G.J. Olsen, R. Overbeek, S. Pramanik, T.M. Schmidt, J.M. Tiedje and C.R. Woese. 1999. A new version of the RDP (Ribosomal Database Project). Nucl. Acids Res., 27:171-173. [PubMed]

  2. Ye, D., J.F. Quensen, III, J.M. Tiedje and S.A. Boyd. 1999. 2-Bromoethanesulfonate, sulfate, molybdate, and ethanesulfonate inhibit anaerobic dechlorination of polychlorobiphenyls by pasteurized microorganisms. Appl. Environ. Microbiol. 65:327-329. [PubMed]

  3. Tiedje, J.M. and J.L. Stein. 1999. Microbial Biodiversity: Strategies for its recovery. pp.682-692. In A.L. Demain and J. Davies (eds.). Manual of Industrial Microbiology and Biotechnology. Amer. Soc. Microbiol., Washington, DC.

  4. Tsoi, T.V., E.G. Plotnikova, J.R. Cole, W.F. Guerin, M. Bagdasarian and J.M. Tiedje. 1999. Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Appl. Environ. Microbiol. 65:2151-2162. [PubMed]

  5. Hrywna, Y., T.V. Tsoi, O.V. Maltseva, J.F. Quensen, III and J.M. Tiedje. 1999. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl. Environ. Microbiol. 65:2163-2169. [PubMed]

  6. Tiedje, J.M., S. Asuming-Brempong, K. Nusslein, T.L. Marsh and S.J. Flynn. 1999. Opening the black box of soil microbial diversity. Appl. Soil Ecology 13:109-122. [ASE Abstract]

  7. Nüsslein, K. and J.M. Tiedje. 1999. Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl. Environ. Microbiol. 65:3622-3626. [PubMed]

  8. Fernandez, A., S. Huang, S. Seston, J. Xing, R. Hickey, C. Criddle and J. Tiedje. 1999. How stable is stable? Function versus community composition. Appl. Environ. Microbiol. 65:3697-3704. [PubMed]

  9. Löffler, F.E., J.M. Tiedje and R.A. Sanford. 1999. Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology. Appl. Environ. Microbiol. 65:4049-4056. [PubMed]

  10. Fathepure, B.Z. and J.M. Tiedje. 1999. Anaerobic bioremediation: Microbiology, principles, and applications. pp. 339-396. In D.C. Adriano, J.M. Bollag, W.T. Frankenberger, Jr. and R.C. Sims (eds.). Bioremediation of Contaminated Soils, Agronomy Monograph no. 37. Soil Science Society of America, Madison, WI.

  11. Song, B., M.M. Haggblom, J. Zhou, J.M. Tiedje and N.J. Palleroni. 1999. Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. Int'l. J. Syst. Bacteriol. 49:1129-1140. [PubMed]

  12. Boutonnet, J.C., P. Bingham, D. Calamari, C. de Rooij, J. Franklin, T. Kawano, J.M. Libre, A. McCulloch, G. Malinverno, J.M. Odom, G.M. Rusch, K. Smythe, I. Sobolev, R. Thompson and J.M. Tiedje. 1999. Environmental risk assessment of trifluoroacetic acid. Hum. Ecol. Risk Assess. 5:59-124.

  13. Tiedje, J.M. 1999. Exploring microbial life in Lake Vostok. p. 19-21. In R.E. Bell and D.M. Karl (eds.), Lake Vostok Workshop: Final Report. Lamont-Doherty of Columbia Univ., Palisades, NY.

  14. Maltseva, O.V., T.V. Tsoi, J.F. Quensen, III, M. Fukuda and J.M. Tiedje. 1999. Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation 10:363-371. [PubMed]

  15. Tiedje, J.M. 2000. 20 years since Dunedin: The past and future of microbial ecology. pp. 933-939. In C.R. Bell, M. Brylinsky, P. Johnson-Green (eds.). Microbial Biosystems: New Frontiers.

  16. Dedysh, S.N., W. Liesack, V.N. Khmelenina, N.E. Suzina, Y.A. Trotsenko, J.D. Semrau, A.M. Bares, N.S. Panikov and J.M. Tiedje. 2000. Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. Int'l. J. Syst. Evol. Microbiol. 50:955-969. [PubMed]

  17. Evtushenko, L.I., V.V. Taran, V.N. Akimov, R.M. Kroppenstedt, J.M. Tiedje and E. Stackebrandt. 2000. Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev., and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 50:73-81. [PubMed]

  18. Evtushenko, L.I., L.V. Dorofeeva, S.A. Subbotin, J.R. Cole and J.M. Tiedje. 2000. Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 50:371-380. [PubMed]

  19. Flynn, S.J., F.E. Loffler and J.M. Tiedje. 2000. Microbial community changes associated with a shift from reductive dechlorination of PCE to reductive dechlorination of cis-DCE and VC. Environ. Sci and Technol. 34:1056-1061.

  20. Maidak, B.L., J.R. Cole, T.G. Lilburn, C.T. Parker, Jr., P.R. Saxman, J.M. Stredwick, G.M. Garrity, B. Li, G.J. Olsen, S. Pramanik, T.M. Schmidt and J.M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28:173-174. [PubMed]

  21. Vishnivetskaya, T., S. Kathariou, J. McGrath, D. Gilichinsky and J.M. Tiedje. 2000. Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments. Extremophiles. 4:165-173. [PubMed]

  22. Löffler, F.E., Q. Sun, J. Li and J.M. Tiedje. 2000. 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Appl. Environ. Microbiol. 66:1369-1374. [PubMed]

  23. Braker, G., J. Zhou, L. Wu, A.H. Devol and J.M. Tiedje. 2000. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities. Appl. Environ. Microbiol. 66:2096-2104. [PubMed]

  24. DeWever, H., J.R. Cole, M.R. Fettig, D.A. Hogan and J.M. Tiedje. 2000. Reductive dehalogenation of trichloroacetic acid by Trichlorobacter thiogenes, gen. nov., sp. nov. Appl. Environ. Microbiol. 66:2297-2301. [PubMed]

  25. Sun, B., J.R. Cole, R.A. Sanford and J.M. Tiedje. 2000. Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Appl. Environ. Microbiol. 66:2408-2413. [PubMed]

  26. Marsh, T.L., P. Saxman, J. Cole and J. Tiedje. 2000. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl. Environ. Microbiol. 66:3616-3620. [PubMed]

  27. Hashsham, S.A., A.S. Fernandez, S.L. Dollhopf, F.B. Dazzo, R.F. Hickey, J.M. Tiedje and C.S. Criddle. 2000. Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose. Appl. Environ. Microbiol. 66:4050-4057. [PubMed]

  28. Fernandez, A.S., S.A. Hashsham, S.L. Dollhopf, L. Raskin, O. Glagoleva, F.B. Dazzo, R.F. Hickey, C.S. Criddle and J.M. Tiedje. 2000. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Appl. Environ. Microbiol. 66:4058-4067. [PubMed]

  29. Nold, S.C., J. Zhou, A.H. Devol and J.M. Tiedje. 2000. Pacific northwest marine sediments contain ammonia-oxidizing bacteria in the ( subdivision of the Proteobacteria. Appl. Environ. Microbiol. 66:4532-4535. [PubMed]

  30. Cho, J.C. and J.M. Tiedje. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl. Environ. Microbiol. 66:5448-5456. [PubMed]

  31. Hyndman, D.W., M.J. Dybas, D. Wiggert, X. Zhao, R. Wallace, T. Voice, A. Chan, M.S. Phanikumar and C.S. Criddle. 2000. Hydraulic characterization and design of a full-scale biocurtain. Ground Water, 38:462-474.

  32. Reichardt, W., K. Inubushi and J. Tiedje. 2000. Microbial processes in C and N dynamics. In G.J.D. Kirk and D.C. Olk (eds.), Carbon and Nitrogen Dynamics in Flodded Soils, International Rice Research Institute (IRRI), Los Baños, The Philippines.

  33. Tiedje, J.M. 2000. Putting novel microbes to work on industry wastes. pp. 47-54, In BioJapan 2000 Symposium Proceedings, Tokyo, Sept. 26-28. Japan Bioindustry Association, Tokyo.

  34. Hooper, D.U., D.E. Bignell, V.K. Brown, L. Brussaard, J.M. Dangerfield, D.H. Wall, D.A. Wardle, D.C. Coleman, K.E. Giller, P. Lavelle, W.H. Van Der Putten, P.C. De Ruiter, J. Rusek, W.L. Silver, J.M. Tiedje and V. Wolters. 2000. Interactions between aboveground and belowground biodiversity in terrestrial ecosystems: patterns, mechanisms, and feedbacks. BioScience 50:1049-1061. [request PDF]

  35. Rodrigues, J.L.M., O.V. Maltseva, T.V. Tsoi, R.R. Helton, J.F. Quensen, III, M. Fukuda and J.M. Tiedje. 2001. Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of PCBs. Environ. Sci. and Technol. 35:663-668. [PubMed]

  36. Quensen, III, J.F., J.M. Tiedje, M.K. Jain and S.A. Mueller. 2001. Factors controlling the rate of DDE dechlorination to DDMU in Palos Verdes margin sediments under anaerobic conditions. Environ. Sci. and Technol. 35:286-291. [PubMed]

  37. Tiedje, J.M., J.C. Cho, A. Murray, D. Treves, B. Xia and J. Zhou. 2001. Soil teeming with life: new frontiers for soil science. pp. 393-412. In R.M. Rees, B.C. Ball, C.D. Campbell and C.A. Watson (eds.), Sustainable Management of Soil Organic Matter. CABI Int'l, Wallingford, U.K.

  38. Qiu, X., L. Wu, H. Huang, P.E. McDonel, A.V. Palumbo, J.M. Tiedje and J.Z. Zhou. 2001. Evaluation of PCR-generated chimeras, mutations and heteroduplexes with 16S rRNA gene-based cloning. Appl. Environ. Microbiol. 67:880-887. [PubMed]

  39. Maidak, B.L., J.R. Cole, T.G. Lilburn, C.T. Parker, Jr., P.R. Saxman, R.J. Farris, G.M. Garrity, G.J. Olsen, T.M. Schmidt and J.M. Tiedje. 2001. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29:173-174. [PubMed]

  40. Grüntzig, V., S.C. Nold, J. Zhou and J.M. Tiedje. 2001. Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Appl. Environ. Microbiol. 67:760-768. [PubMed]

  41. Braker, G., H.L. Ayala-del Rio, A.H. Devol, A. Fesefeldt and J.M. Tiedje. 2001. Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific Northwest marine sediments by Terminal Restriction Fragment Length Polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl. Environ. Microbiol. 67:1893-1901. [PubMed]

  42. Dollhopf, S.L., S.A. Hashsham, F.B. Dazzo, R.F. Hickey, C.S. Criddle and J.M. Tiedje. 2001. The impact of fermentative organisms on carbon flow in methanogenic systems under constant low-substrate conditions. Appl. Microbiol. Biotechnol. 56:531-538. [PubMed]

  43. Sun, B., J.R. Cole and J.M. Tiedje. 2001. Desulfomonile limimaris sp. nov., an anaerobic dehalogenating bacterium from marine sediments. Int'l. J. Syst. Evol. Microbiol. 51:365-371. [PubMed]

  44. Dollhopf, S.L., S.A. Hashsham and J.M. Tiedje. 2001. Interpreting 16S rDNA T-RFLP data: Application of self-organizing maps and principle component analysis to describe community dynamics and convergence. Microb. Ecol. 42:495-505. [PubMed]

  45. Cho, J.C. and J.M. Tiedje. 2001. Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays. Appl. Environ. Microbiol. 67:3677-3682. [PubMed]

  46. Evtushenko, L.I., L.V. Dorofeeva, T.G. Dobrovolskaya, G.M. Streshinskaya, S.A. Subbotin and J.M. Tiedje. 2001. Agreia bicolorata gen. nov., sp. nov. to accommodate actinobacteria isolated from narrow reed grass infected by nematode Heteroanguina graminophila. Int'l J. Syst. Evol. Microbiol. 51:2073-2079. [PubMed]

  47. Murray, A.E., D. Lies, G. Li, K. Nealson, J. Zhou and J.M. Tiedje. 2001. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. PNAS 98:9853-9858. [PubMed]

  48. Hurt, R.A., X. Qiu, L. Wu, Y. Roh, A.V. Palumbo, J.M. Tiedje and J. Zhou. 2001. Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol. 67:4495-4503. [PubMed]

  49. Wu, L., D.K. Thompson, G. Li, R.A. Hurt, J.M. Tiedje and J. Zhou. 2001. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl. Environ. Microbiol. 67:5780-5790. [PubMed]

  50. Tiedje, J., A. Fernandez, S. Hashsham, S. Dollhopf, F. Dazzo, R. Hickey and C. Criddle. 2001. Stability, persistence and resilience in anaerobic reactors: a community unveiled. In Advances in Water and Wastewater Treatment Technology, (eds) Matsuo, Hanaki, Takizawa, Satoh; Elsevier, Amsterdam.

  51. Hashsham, S.A., T.L. Marsh, S.L. Dollhopf, A.S. Fernandez, F.B. Dazzo, R.F. Hickey, C.S. Criddle and J.M. Tiedje. 2001. Relating function and community structure of complex microbial systems using neural networks. In Advances in Water and Wastewater Treatment Technology, (eds) Matsuo, Hanaki, Takizawa, Satoh; Elsevier, Amsterdam.

  52. Kitagawa, W., S. Takami, K. Miyauchi, E. Masai, Y. Kamagata, J.M. Tiedje and M. Fukuda. 2002. Novel 2,4-Dichlorophenoxyacetic acid degradation genes from an oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. J. Bacteriol. 184:509-518. [PubMed]

  53. Beliaev, A.S., D.K. Thompson, C.S. Giometti, C.C. Brandt, G. Li, J. Yates III, K.H. Nealson, J.M. Tiedje, A.E. Murray, J.F. Heidelberg and J. Zhou. 2001. Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. OMICS 6(1):39-60; errata in OMICS 7:138-139. [PubMed]

  54. Sanford, R.A., J.R. Cole and J.M. Tiedje. 2002. Characterization and description of Anaeromyxobacter dehalogenans gen. nov. sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl. Environ. Microbiol. 68:893-900. [PubMed]

  55. Dedysh, S.N., V.N. Khmelenina, N.E. Suzina, Y.A. Trotsenko, J.D. Semrau, W. Liesack and J.M. Tiedje. 2002. Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int'l J. Syst. Evol. Microbiol. 52:251-261. [PubMed]

  56. Zhou, J., B. Xia, D.S. Treves, L.Y. Wu, T.L. Marsh, R.V. O'Neill, A.V. Palumbo and J.M. Tiedje. 2002. Spatial and resource factors influencing high microbial diversity in soil. Appl. Environ. Microbiol. 68:326-334. [PubMed]

  57. Thompson, D.K., A.S. Beliaev, C.S. Giometti, D. Lies, K.H. Nealson, H. Lim, J. Yates III, C.C. Brandt, J.M. Tiedje and J. Zhou. 2002. Transcription and proteomic analysis of a ferric uptake regulator (Fur) mutant of Shewanella oneidensis: Possible involvement of Fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl. Environ. Microbiol. 68:881-892. [PubMed]

  58. Cho, J.-C., J.M. Tiedje. 2002. Quantitative detection of microbial genes by using DNA microarrays. Appl. Environ. Microbiol. 68:1425-1430. [PubMed]

  59. Prieme, A., G. Braker and J.M. Tiedje. 2002. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl. Environ. Microbiol. 68:1893-1900. [PubMed]

  60. Dybas, M.J., D.W. Hyndman, R. Heine, J. Tiedje, K. Linning, D. Wiggert, T. Voice, X. Zhao, L. Dybas and C.S. Criddle. 2002. Development, operation and long-term performance of a full-scale biocurtain utilizing bioaugmentation. Environ. Sci. and Technol. 36:3635-3644. [PubMed]

  61. He, J., Y. Sung, M.E. Dollhopf, B.Z. Fathepure, J.M. Tiedje and F.E. Löffler. 2002. Acetate versus hydrogen as direct electron donors to stimulate the microbial reductive dechlorination process at chloroethene-contaminated sites. Environ. Sci. and Technol. 36:3945-3952. [PubMed]

  62. Itoh, K., R. Kanda, Y. Sumita, H. Kim, Y. Kamagata, K. Suyama, H. Yamamoto, R.P. Hausinger and J.M. Tiedje. 2002. tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in µ-Proteobacteria. Appl. Environ. Microbiol. 68:3449-3454. [PubMed]

  63. Rodrigues, J.L.M., M.R. Aiello, J.W. Urbance, T.V. Tsoi and J.M. Tiedje. 2002. Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. J. Microbiol. Methods 51:181-189. [PubMed]

  64. Sun, B., B.M. Griffin, H.L. Ayala-del-Rio, S.A. Hashsham and J.M. Tiedje. 2002. Microbial dehalorespiration with 1,1,1-trichloroethane. Science. 298:1023-1025. [PubMed]

  65. Tiedje, J.M. 2002. Shewanella - the environmentally versatile genome. Nature Biotechnol. 20:1093-1094. [PubMed]

  66. Dorofeeva, L.V., L.I. Evtushenko, V.I. Krausova, A.V. Karpov, S.A. Subbotin and J.M. Tiedje. 2002. Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively. Int'l J. Syst. Evol. Microbiol 52:1917-1923. [PubMed]

  67. Zhou, J.-Z. and J.M. Tiedje. 2002. New DOE program expands dramatically beyond microbial genomics. ASM News: 68:110-111.

  68. Dollhopf, S.L., M.L. Pariseau, S.A. Hashsham and J.M. Tiedje. 2003. Competitive and cooperative interactions affecting a fermentative spirochete in anaerobic chemostats. Microb. Ecol. 46:1-11. [PubMed]

  69. Yan, T.-F., M.W. Fields, L.-Y. Wu, Y.-G. Zu, J.M. Tiedje and J.-Z. Zhou. 2003. Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ. Microbiol. 5:13-24. [PubMed]

  70. Liu, X.L., S.M. Tiquia, G. Holguin, L. Wu, S.C. Nold, A.H. Devol, K. Luo, A.V. Palumbo, J.M. Tiedje and J.-Z. Zhou. 2003. Molecular diversity of denitrifying genes in continental margin sediments within the oxygen deficient zone of the Pacific Coast of Mexico. Appl. Environ. Microbiol. 69:3549-3560. [PubMed]

  71. Lendvay, J.M., F.E. Loffler, M. Dollhopf, M.R. Aiello, G. Daniels, B.Z. Fathepure, M. Gebhard, R. Heine, R. Helton, J. Shi, R. Krajmalnik-Brown, C.L. Major, Jr., M.J. Barcelona, E. Petrovskis, R. Hickey, J.M. Tiedje and P. Adriaens. 2003. Bioreactive barriers: A comparison of bioaugmentation and biostimulation for chlorinated solvent remediation. Environ. Sci. Technol. 37:1422-1431. [EST Abstract]

  72. Sung, Y., K.M. Ritalahti, R.A. Sanford, J.W. Urbance, S.J. Flynn, J.M. Tiedje and F.E. Löffler. 2003. Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria, and their description as Desulfuromonas michiganensis sp. nov. Appl. Environ. Microbiol. 69:2964-2974. [PubMed]

  73. Braker, G. and J.M. Tiedje. 2003. Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl. Environ. Microbiol. 69:3476-3483. [PubMed]

  74. Zhou, J.-Z., B. Xia, H. Huang, D.S. Treves, L.J. Hauser, R.J. Mural, A.V. Palumbo and J.M.Tiedje. 2003. Bacterial phylogenetic diversity and a novel candidate division of two humid region sandy surface soils. Soil Biol. Biochem. 35:915-924.

  75. Löffler, F.E., J.R. Cole, K.M. Ritalahti and J.M. Tiedje. 2003. Diversity of dechlorinating bacteria. pp. 53-87. In Dehalogenation: Microbial Processes and Environmental Applications, (eds) Haggblom and Boussert; Kluwer Academic Publishers.

  76. Dorofeeva, L.V., V.I. Krausova, L.I. Evtushenko and J.M. Tiedje. 2003. Agromyces albus sp. nov., isolated from a plant (Androsace sp.). Int'l J. Syst. Evol. Microbiol. 53:1435-1438. [PubMed]

  77. Treves, D.S., B. Xia, J. Zhou and J.M. Tiedje. 2003. A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil. Microb. Ecol. 45:20-28. [PubMed]

  78. Urbance, J.W., J. Cole, P. Saxman and J.M. Tiedje. 2003. BSD: The biodegradative strain database. Nucleic Acids Res. 31:152-155. [PubMed]

  79. Cole, J.R., B. Chai, T.L. Marsh, R.J. Farris, Q. Wang, S.A. Kulam, S. Chandra, D.M. McGarrell, T.M. Schmidt, G.M. Garrity and J.M. Tiedje. 2003. The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443. [PubMed]

  80. Denef, V.J., J. Park, J.L.M. Rodrigues, T.V. Tsoi, S.A. Hashsham and J.M. Tiedje. 2003. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ. Microbiol. 5:933-943. [PubMed]

  81. Gilichinsky, D., E. Rivkina, V. Shcherbakova, K. Laurinavichuis and J. Tiedje. 2003. Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: a model for astrobiology. Astrobiology 3:331-341. [Pubmed]